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A new toadfish (Batrachoididae) considered to be a glacial relict in the West Indies. Amer Mus Novitates. 2047:1-24.. 1961.
Comparative population dynamics of Peromyscus leucopus in North America: influences of climate, food, and density dependence. Population Ecology . 51:133-144.. 2009.
The compleat cladist. A primer of phylogenetic procedures. University of Kansas Museum of Natural History Special Publication. 19:i-ix,1-158.. 1991.
The Evolutionary Species Concept Reconsidered. Systematic Zoology. 27:17-26.. 1978.
Species and speciation in phylogenetic systematics, with examples from the North American fish fauna. Annals of the Missouri Botanical Garden. 72:596-635.. 1985.
Family Lepisosteidae (gars) as living fossils. Living fossils. Springer-Verlag, New York. :160–165.. 1984.
Homology, identity and transformation. Mesozoic Fishes. 4:9–21.. 2008.
Victims of history - a nonequilibrium approach to evolution. Systematic Zoology. 31:1-24.. 1982.
Historical ecology and coevolution. Systematics and evolution: a matter of diversity. :331–341.. 1986.
Vicariance biogeography. Annual Review of Ecology and Systematics. 19:513-542.. 1988.
Must phylogenetic classifications be so complicated? Systematic Zoology. 29:309-313.. 1980.
Phylogenetic relationships among members of the Hybopsis dorsalis species group (Teleostei: Cyprinidae). Occasional Papers of the Museum of Natural History University of Kansas. :1-18.. 1992.
Ventral Gill Arch Muscles and the Phylogenetic Relationships of Latimeria-Chalumnae. Occasional Papers California Academy of Sciences. O:56-67.. 1979.
A critique from the evolutionary species concept perspective. Species concepts and phylogenetic theory. A debate.. :146-158.. 2000.
An overview of alligator management in Florida. Crocodiles. Proceedings of the 10th Working Meeting of the Crocodile Specialist Group of the Species Survival Commission of IUCN - The World Conservation Union convened at Gainesville, Florida, U.S.A., 23 to 27 April 1990. Volume 2.. :274-285.. 1990.
Fundulus blairae, a new species of the Fundulus nottii complex (Teleostei, Cyprinodontidae). American Mus. Novit.. No.,2577:1-13.. 1975.
Nonequilibrium Thermodynamics and Evolution: A Response to Løvtrup. Systematic Zoology. 32:209-219.. 1983.
Methods in vicariance biogeography. Systematics and evolution: a matter of diversity. :283–306.. 1987.
On species and speciation with reference to the fishes. Fish and Fisheries. 3:161-170.. 2002.
Remarks on Willis' species concept. Systematic Zoology. 30:86-87.. 1981.
Cladograms and Phylogenetic Trees. Systematic Zoology. 28:88-92.. 1979.
Distributed information systems and predictive biogeography: putting natural history collections to work in the 21st Century. The new panorama of animal evolution: proceedings XVIII International Congress of Zoology.. :619-624.. 2003.
Are Monotypic Genera Paraphyletic. Systematic Zoology. 26:352-355.. 1977.
The interrelationships of Acanthomorph fishes: A total evidence approach using molecular and morphological data. Biochemical Systematics and Ecology. 28:319-350.. 2000.
Niche modeling and geographic range predictions in the marine environment using a machine-learning algorithm. Oceanography. 16:120–127.. 2003.