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Comparison of traps and baits for censusing small mammals in neotropical lowlands. Journal of Mammalogy. 77:274-281.. 1996.
Comparison of Ear-Tagging and Toe-Clipping in Prairie Voles, Microtus-Ochrogaster. Journal of Mammalogy. 71:252-255.. 1990.
Predictable ecology and geography of avian influenza (H5N1) transmission in Nigeria and West Africa. Transactions of the Royal Society of Tropical Medicine and Hygiene . 102:471-479.. 2008.
Variation in Populations of the Fish Cottus-Carolinae in the Alabama River System with Description of a New Subspecies from Below the Fall Line. American Midland Naturalist. 83:368-381.. 1970.
Remarks on Willis' species concept. Systematic Zoology. 30:86-87.. 1981.
Cladograms and Phylogenetic Trees. Systematic Zoology. 28:88-92.. 1979.
Are Monotypic Genera Paraphyletic. Systematic Zoology. 26:352-355.. 1977.
Distributed information systems and predictive biogeography: putting natural history collections to work in the 21st Century. The new panorama of animal evolution: proceedings XVIII International Congress of Zoology.. :619-624.. 2003.
Niche modeling and geographic range predictions in the marine environment using a machine-learning algorithm. Oceanography. 16:120–127.. 2003.
The interrelationships of Acanthomorph fishes: A total evidence approach using molecular and morphological data. Biochemical Systematics and Ecology. 28:319-350.. 2000.
Kinds, individuals, and theories. What the Philosophy of Biology Is (M. Reese, ed.). Kluwer Academic Publ., Dordrecht, The Netherlands. :289–300.. 1989.
Species concepts and their importance in fisheries management and research. Transactions of the American Fisheries Society. 136:1126-1135.. 2007.
Entropy and evolution. Entropy, information, and evolution. New perspectives on physical and biological evolution.. :173-188.. 1988.
Phylogenetic systematics and vicariance biogeography. Systematic Botany. 5:194-220.. 1980.
The Evolutionary Species Concept Reconsidered. Systematic Zoology. 27:17-26.. 1978.
The compleat cladist. A primer of phylogenetic procedures. University of Kansas Museum of Natural History Special Publication. 19:i-ix,1-158.. 1991.
Family Lepisosteidae (gars) as living fossils. Living fossils. Springer-Verlag, New York. :160–165.. 1984.
Species and speciation in phylogenetic systematics, with examples from the North American fish fauna. Annals of the Missouri Botanical Garden. 72:596-635.. 1985.
Homology, identity and transformation. Mesozoic Fishes. 4:9–21.. 2008.
Victims of history - a nonequilibrium approach to evolution. Systematic Zoology. 31:1-24.. 1982.
Historical ecology and coevolution. Systematics and evolution: a matter of diversity. :331–341.. 1986.
Vicariance biogeography. Annual Review of Ecology and Systematics. 19:513-542.. 1988.
Must phylogenetic classifications be so complicated? Systematic Zoology. 29:309-313.. 1980.
Ventral Gill Arch Muscles and the Phylogenetic Relationships of Latimeria-Chalumnae. Occasional Papers California Academy of Sciences. O:56-67.. 1979.