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Wiley, III EO.  1987.  Methods in vicariance biogeography. Systematics and evolution: a matter of diversity. :283–306.
Wiley, III EO.  1988.  Entropy and evolution. Entropy, information, and evolution. New perspectives on physical and biological evolution.. :173-188.
Wiley, III EO, Siegel-Causey D, Brooks DR, Funk VA.  1991.  The compleat cladist. A primer of phylogenetic procedures. University of Kansas Museum of Natural History Special Publication. 19:i-ix,1-158.
Wiley, III EO.  1989.  Kinds, individuals, and theories. What the Philosophy of Biology Is (M. Reese, ed.). Kluwer Academic Publ., Dordrecht, The Netherlands. :289–300.
Wiley, III EO.  1988.  Vicariance biogeography. Annual Review of Ecology and Systematics. 19:513-542.
Wiley, III EO, Mayden RL.  2000.  A critique from the evolutionary species concept perspective. Species concepts and phylogenetic theory. A debate.. :146-158.
Wiley, III EO, Schultze H-P.  1984.  Family Lepisosteidae (gars) as living fossils. Living fossils. Springer-Verlag, New York. :160–165.